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PDXP-DT PDXP divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927051, updated on 10-Oct-2023

Summary

Official Symbol
PDXP-DTprovided by HGNC
Official Full Name
PDXP divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:40525
See related
Ensembl:ENSG00000233360 AllianceGenome:HGNC:40525
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 5.3), appendix (RPKM 5.2) and 23 other tissues See more
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Genomic context

See PDXP-DT in Genome Data Viewer
Location:
22q13.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (37641832..37658377, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (38103118..38119666, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (38037839..38054384, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:37965972-37966480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:37967120-37967620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:37967621-37968121 Neighboring gene galectin 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18977 Neighboring gene Sharpr-MPRA regulatory region 7746 Neighboring gene CRISPRi-validated cis-regulatory element chr22.1757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18978 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:38005225-38005846 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:38029311-38030184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18984 Neighboring gene Sharpr-MPRA regulatory region 10481 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13689 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13690 Neighboring gene SH3 domain binding protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18985 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18986 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:38054605-38055106 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:38055933-38056444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:38056445-38056955 Neighboring gene pyridoxal phosphatase Neighboring gene RNA, 7SL, cytoplasmic 385, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109952.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z83844
    Related
    ENST00000456099.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    37641832..37658377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    38103118..38119666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)