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ovgp1 oviductal glycoprotein 1 [ Danio rerio (zebrafish) ]

Gene ID: 101886411, updated on 2-Nov-2024

Summary

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Official Symbol
ovgp1provided by ZNC
Official Full Name
oviductal glycoprotein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-140106-118
See related
Ensembl:ENSDARG00000075745 AllianceGenome:ZFIN:ZDB-GENE-140106-118
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable chitin binding activity and hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Is expressed in neuromast mantle cell. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ovgp1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (24027451..24033597)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (23788398..23798092)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene chitinase, acidic.2 Neighboring gene chitinase, acidic.3 Neighboring gene zinc finger CCCH-type containing 11A Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. New paralogues and revised time line in the expansion of the vertebrate GH18 family. Hussain M, et al. J Mol Evol, 2013 Apr. PMID 23558346
  2. scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling. Lush ME, et al. Elife, 2019 Jan 25. PMID 30681411, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chitinase-3-like protein 1
Names
chio1
zmp:0000001158

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    24027451..24033597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068224341.1 → XP_068080442.1  chitinase-3-like protein 1

    Related
    ENSDARP00000102083.3, ENSDART00000111829.4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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