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LOC101886156 sterile alpha motif domain-containing protein 9 [ Danio rerio (zebrafish) ]

Gene ID: 101886156, updated on 12-Sep-2024

Summary

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Gene symbol
LOC101886156
Gene description
sterile alpha motif domain-containing protein 9
See related
Ensembl:ENSDARG00000102729
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC101886156 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (45332079..45341329, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (45478916..45488331, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886114 Neighboring gene uncharacterized LOC103910115 Neighboring gene calmodulin regulated spectrin-associated protein family, member 2b Neighboring gene WD repeat domain 47a Neighboring gene si:ch211-66k16.27 Neighboring gene uncharacterized LOC137488154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    45332079..45341329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352227.3 → XP_017207716.1  sterile alpha motif domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A0G2KUC6, A0A8M6YTW1
    Related
    ENSDARP00000136031.2, ENSDART00000167123.2
    Conserved Domains (1) summary
    cl15755
    Location:12 → 76
    SAM_superfamily; SAM (Sterile alpha motif )

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394513.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    164307..169260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471286.2 → XP_021326961.1  sterile alpha motif domain-containing protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PXF2
    Conserved Domains (2) summary
    cl15755
    Location:14 → 78
    SAM_superfamily; SAM (Sterile alpha motif )
    cl27702
    Location:82 → 229
    COG3942; Surface antigen [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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