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hectd4 HECT domain E3 ubiquitin protein ligase 4 [ Danio rerio (zebrafish) ]

Gene ID: 101885095, updated on 27-Mar-2024

Summary

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Gene symbol
hectd4
Gene description
HECT domain E3 ubiquitin protein ligase 4
See related
Ensembl:ENSDARG00000101079
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
76
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (72460892..72570638)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (72168908..72278858, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene rabphilin 3A homolog (mouse), b Neighboring gene group 3 secretory phospholipase A2-like Neighboring gene mitochondrial ribosomal protein L21 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase HECTD4
Names
HECT domain containing E3 ubiquitin protein ligase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    72460892..72570638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009303668.3 → XP_009301943.1  probable E3 ubiquitin-protein ligase HECTD4 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B4L0
    Conserved Domains (3) summary
    smart00119
    Location:4060 → 4410
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd13735
    Location:2413 → 2568
    SPRY_HECT_like; SPRY domain in HECT E3
    cl00077
    Location:4026 → 4414
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_009303669.3 → XP_009301944.1  probable E3 ubiquitin-protein ligase HECTD4 isoform X2

    UniProtKB/TrEMBL
    A0A8M3B1P1
    Related
    ENSDARP00000136785.2, ENSDART00000160682.2
    Conserved Domains (3) summary
    smart00119
    Location:4058 → 4408
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd13735
    Location:2411 → 2566
    SPRY_HECT_like; SPRY domain in HECT E3
    cl00077
    Location:4024 → 4412
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

RNA

  1. XR_662259.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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