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BMAL1 basic helix-loop-helix ARNT like 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101865448, updated on 3-Dec-2024

Summary

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Gene symbol
BMAL1
Gene description
basic helix-loop-helix ARNT like 1
See related
Ensembl:ENSMFAG00000034184
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
ARNTL
Orthologs
human mouse all
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Genomic context

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See BMAL1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 14 NC_088388.1 (52346026..52456464, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 14 NC_052268.1 (73665169..73746067)

Chromosome 14 - NC_088388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102145948 Neighboring gene BTB domain containing 10 Neighboring gene 5S ribosomal RNA Neighboring gene lysophosphatidic acid receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic helix-loop-helix ARNT-like protein 1
Names
Brain and muscle ARNT-like 1
aryl hydrocarbon receptor nuclear translocator like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088388.1 Reference T2T-MFA8v1.0

    Range
    52346026..52456464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065528490.1 → XP_065384562.1  basic helix-loop-helix ARNT-like protein 1 isoform X8

    UniProtKB/TrEMBL
    G7PQP4

  2. XM_065528489.1 → XP_065384561.1  basic helix-loop-helix ARNT-like protein 1 isoform X7

    UniProtKB/TrEMBL
    G7PQP4

  3. XM_065528488.1 → XP_065384560.1  basic helix-loop-helix ARNT-like protein 1 isoform X5

    UniProtKB/TrEMBL
    G7PQP4

  4. XM_065528487.1 → XP_065384559.1  basic helix-loop-helix ARNT-like protein 1 isoform X4

    UniProtKB/TrEMBL
    G7PQP4

  5. XM_065528485.1 → XP_065384557.1  basic helix-loop-helix ARNT-like protein 1 isoform X2

    UniProtKB/TrEMBL
    G7PQP4

  6. XM_065528486.1 → XP_065384558.1  basic helix-loop-helix ARNT-like protein 1 isoform X3

    UniProtKB/TrEMBL
    G7PQP4

  7. XM_065528484.1 → XP_065384556.1  basic helix-loop-helix ARNT-like protein 1 isoform X1

    UniProtKB/TrEMBL
    G7PQP4

  8. XM_065528515.1 → XP_065384587.1  basic helix-loop-helix ARNT-like protein 1 isoform X13

    UniProtKB/TrEMBL
    G7PQP4

  9. XM_065528496.1 → XP_065384568.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  10. XM_065528505.1 → XP_065384577.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  11. XM_065528501.1 → XP_065384573.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  12. XM_065528499.1 → XP_065384571.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  13. XM_065528500.1 → XP_065384572.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  14. XM_065528516.1 → XP_065384588.1  basic helix-loop-helix ARNT-like protein 1 isoform X13

    UniProtKB/TrEMBL
    G7PQP4

  15. XM_065528511.1 → XP_065384583.1  basic helix-loop-helix ARNT-like protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A2K5X1L8, G7PQP4

  16. XM_065528506.1 → XP_065384578.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  17. XM_065528518.1 → XP_065384590.1  basic helix-loop-helix ARNT-like protein 1 isoform X15

    UniProtKB/TrEMBL
    G7PQP4

  18. XM_065528517.1 → XP_065384589.1  basic helix-loop-helix ARNT-like protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A2K5X1Q0, G7PQP4

  19. XM_065528514.1 → XP_065384586.1  basic helix-loop-helix ARNT-like protein 1 isoform X13

    UniProtKB/TrEMBL
    G7PQP4

  20. XM_065528508.1 → XP_065384580.1  basic helix-loop-helix ARNT-like protein 1 isoform X11

    UniProtKB/TrEMBL
    G7PQP4

  21. XM_065528510.1 → XP_065384582.1  basic helix-loop-helix ARNT-like protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A2K5X1L8, G7PQP4

  22. XM_065528503.1 → XP_065384575.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  23. XM_065528493.1 → XP_065384565.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  24. XM_065528497.1 → XP_065384569.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  25. XM_065528512.1 → XP_065384584.1  basic helix-loop-helix ARNT-like protein 1 isoform X13

    UniProtKB/TrEMBL
    G7PQP4

  26. XM_065528509.1 → XP_065384581.1  basic helix-loop-helix ARNT-like protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A2K5X1L8, G7PQP4

  27. XM_065528502.1 → XP_065384574.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  28. XM_065528491.1 → XP_065384563.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  29. XM_065528522.1 → XP_065384594.1  basic helix-loop-helix ARNT-like protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A2K5X163, G7PQP4

  30. XM_065528521.1 → XP_065384593.1  basic helix-loop-helix ARNT-like protein 1 isoform X18

    UniProtKB/TrEMBL
    G7PQP4

  31. XM_065528520.1 → XP_065384592.1  basic helix-loop-helix ARNT-like protein 1 isoform X17

    UniProtKB/TrEMBL
    G7PQP4

  32. XM_065528504.1 → XP_065384576.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  33. XM_065528494.1 → XP_065384566.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  34. XM_065528507.1 → XP_065384579.1  basic helix-loop-helix ARNT-like protein 1 isoform X10

    UniProtKB/TrEMBL
    G7PQP4

  35. XM_065528498.1 → XP_065384570.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  36. XM_065528495.1 → XP_065384567.1  basic helix-loop-helix ARNT-like protein 1 isoform X9

    UniProtKB/TrEMBL
    G7PQP4

  37. XM_015435047.3 → XP_015290533.1  basic helix-loop-helix ARNT-like protein 1 isoform X6

    UniProtKB/TrEMBL
    G7PQP4
    Conserved Domains (5) summary
    smart00091
    Location:178 → 237
    PAS; PAS domain
    cd00130
    Location:370 → 465
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:103 → 155
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:175 → 282
    PAS; PAS fold
    pfam14598
    Location:368 → 470
    PAS_11; PAS domain

  38. XM_065528519.1 → XP_065384591.1  basic helix-loop-helix ARNT-like protein 1 isoform X16

    UniProtKB/TrEMBL
    G7PQP4

  39. XM_065528523.1 → XP_065384595.1  basic helix-loop-helix ARNT-like protein 1 isoform X20

  40. XM_065528525.1 → XP_065384597.1  basic helix-loop-helix ARNT-like protein 1 isoform X21

Nucleotide Protein
Heading Accession and Version

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