Format

Send to:

Choose Destination

Ddx58 DExD/H-box helicase 58 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101838597, updated on 18-Jul-2018

Summary

Gene symbol
Ddx58
Gene description
DExD/H-box helicase 58
See related
Ensembl:ENSMAUG00000021814
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Also known as
RIG-I
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See Ddx58 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801690.1 (9112391..9162257)

NW_004801690.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B6 Neighboring gene TOP1 binding arginine/serine rich protein Neighboring gene uncharacterized LOC106021839 Neighboring gene aconitase 1 Neighboring gene uncharacterized LOC110342582

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004801690 Unplaced Scaffold Reference MesAur1.0 Primary Assembly

General protein information

Preferred Names
probable ATP-dependent RNA helicase DDX58
Names
putative ATP-dependent RNA helicase DDX58
NP_001297482.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310553.1NP_001297482.1  probable ATP-dependent RNA helicase DDX58

    See identical proteins and their annotated locations for NP_001297482.1

    Status: PROVISIONAL

    Source sequence(s)
    KR269854
    UniProtKB/TrEMBL
    A0A0G2YNC7
    Related
    ENSMAUP00000025205.1, ENSMAUT00000029227.1
    Conserved Domains (7) summary
    COG1111
    Location:243773
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd00046
    Location:260412
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd08816
    Location:292
    CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
    cd08817
    Location:100188
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:805918
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd12090
    Location:471606
    MDA5_ID; Insert domain of MDA5
    pfam00271
    Location:615735
    Helicase_C; Helicase conserved C-terminal domain

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MesAur1.0 Primary Assembly

Genomic

  1. NW_004801690.1 Reference MesAur1.0 Primary Assembly

    Range
    9112391..9162257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center