Format

Send to:

Choose Destination

NCBP1 nuclear cap binding protein subunit 1 [ Ficedula albicollis (collared flycatcher) ]

Gene ID: 101806087, updated on 18-Jul-2018

Summary

Gene symbol
NCBP1
Gene description
nuclear cap binding protein subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See NCBP1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
22
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) Z NC_021700.1 (42974532..43007085)

Chromosome Z - NC_021700.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC101806589

Genomic regions, transcripts, and products

Genomic Sequence:
NC_021700.1 Chromosome Z Reference FicAlb1.5 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Cap binding complex, organism-specific biosystem (from KEGG)
    Cap binding complex, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
  • Cap binding complex, conserved biosystem (from KEGG)
    Cap binding complex, conserved biosystemStructural complex; Genetic information processing; Spliceosome
  • RNA transport, organism-specific biosystem (from KEGG)
    RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • RNA transport, conserved biosystem (from KEGG)
    RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • mRNA surveillance pathway, organism-specific biosystem (from KEGG)
    mRNA surveillance pathway, organism-specific biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...
  • mRNA surveillance pathway, conserved biosystem (from KEGG)
    mRNA surveillance pathway, conserved biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...

General protein information

Preferred Names
nuclear cap-binding protein subunit 1
Names
nuclear cap binding protein subunit 1, 80kDa

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021700.1 Reference FicAlb1.5 Primary Assembly

    Range
    42974532..43007085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005061072.2XP_005061129.1  nuclear cap-binding protein subunit 1

    Conserved Domains (3) summary
    smart00543
    Location:13225
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:336455
    MIF4G_like; MIF4G like
    pfam09090
    Location:476744
    MIF4G_like_2; MIF4G like
Support Center