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SH3TC1 SH3 domain and tetratricopeptide repeats 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 101801063, updated on 27-Jun-2018

Summary

Gene symbol
SH3TC1
Gene description
SH3 domain and tetratricopeptide repeats 1
Locus tag
Anapl_00098
See related
Ensembl:ENSAPLG00000011482
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs

Genomic context

See SH3TC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current BGI_duck_1.0 (GCF_000355885.1) Unplaced Scaffold NW_004676748.1 (4857953..4894367, complement)

NW_004676748.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110352101 Neighboring gene HtrA serine peptidase 3 Neighboring gene actin binding LIM protein family member 2 Neighboring gene uncharacterized LOC110352094

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004676748 Unplaced Scaffold Reference BGI_duck_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
SH3 domain and tetratricopeptide repeat-containing protein 1
Names
SH3 domain and tetratricopeptide repeats-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BGI_duck_1.0 Primary Assembly

Genomic

  1. NW_004676748.1 Reference BGI_duck_1.0 Primary Assembly

    Range
    4857953..4894367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021270006.1XP_021125681.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  2. XM_021270009.1XP_021125684.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  3. XM_005016195.3XP_005016252.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005016252.1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  4. XM_021270007.1XP_021125682.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  5. XM_013096406.2XP_012951860.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012951860.1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  6. XM_021270008.1XP_021125683.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (4) summary
    cd11885
    Location:315369
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:801827
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11651234
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:609947
    TPR_11; TPR repeat
  7. XM_005016196.3XP_005016253.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X2

    Conserved Domains (4) summary
    cd11885
    Location:275329
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:761787
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:11671238
    TPR_11; TPR repeat
    pfam13424
    Location:11251195
    TPR_12; Tetratricopeptide repeat
  8. XM_013096408.2XP_012951862.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X3

    Related
    ENSAPLP00000011288.1, ENSAPLT00000012012.1
    Conserved Domains (3) summary
    cd11885
    Location:207261
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:693719
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:10571126
    TPR_12; Tetratricopeptide repeat
  9. XM_021270010.1XP_021125685.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X3

    Conserved Domains (3) summary
    cd11885
    Location:207261
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:693719
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:10571126
    TPR_12; Tetratricopeptide repeat
  10. XM_005016199.3XP_005016256.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005016256.1

    Conserved Domains (3) summary
    cd11885
    Location:130184
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:616642
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:9801049
    TPR_12; Tetratricopeptide repeat
  11. XM_021270011.1XP_021125686.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

    Conserved Domains (3) summary
    cd11885
    Location:130184
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:616642
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:9801049
    TPR_12; Tetratricopeptide repeat
  12. XM_005016198.3XP_005016255.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005016255.1

    Conserved Domains (3) summary
    cd11885
    Location:130184
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:616642
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:9801049
    TPR_12; Tetratricopeptide repeat
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