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LOC101780319 phenylalanine/tyrosine ammonia-lyase [ Setaria italica (foxtail millet) ]

Gene ID: 101780319, updated on 21-Dec-2023
Gene symbol
LOC101780319
Gene description
phenylalanine/tyrosine ammonia-lyase
Locus tag
SETIT_016504mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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See LOC101780319 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) I NC_028450.1 (31757531..31761774, complement)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675961.1 (31757542..31761773, complement)

Chromosome I - NC_028450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101767509 Neighboring gene uncharacterized LOC101780032 Neighboring gene phenylalanine ammonia-lyase Neighboring gene phenylalanine ammonia-lyase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
phenylalanine/tyrosine ammonia-lyase

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028450.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    31757531..31761774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004953096.4 → XP_004953153.1  phenylalanine/tyrosine ammonia-lyase

    UniProtKB/TrEMBL
    K3YQG1
    Conserved Domains (1) summary
    PLN02457
    Location:7 → 698
    PLN02457; phenylalanine ammonia-lyase
Nucleotide Protein Strain
Heading Accession and Version

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