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LOC101778884 vacuolar protein sorting-associated protein 41 homolog [ Setaria italica (foxtail millet) ]

Gene ID: 101778884, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101778884
Gene description
vacuolar protein sorting-associated protein 41 homolog
Locus tag
SETIT_021067mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101778884 in Genome Data Viewer
Location:
chromosome: III
Exon count:
19
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) III NC_028452.1 (1024178..1031236)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675963.1 (1024180..1031230)

Chromosome III - NC_028452.1Genomic Context describing neighboring genes Neighboring gene anamorsin homolog Neighboring gene BTB/POZ domain-containing protein At1g50280 Neighboring gene ubiquinone biosynthesis protein COQ4 homolog, mitochondrial Neighboring gene small glutamine-rich tetratricopeptide repeat-containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 41 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028452.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    1024178..1031236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004960043.2 → XP_004960100.1  vacuolar protein sorting-associated protein 41 homolog

    UniProtKB/TrEMBL
    A0A368QAN6, K3Z3E9
    Conserved Domains (4) summary
    smart00299
    Location:619 → 762
    CLH; Clathrin heavy chain repeat homology
    sd00039
    Location:67 → 100
    7WD40; WD40 repeat [structural motif]
    cl17238
    Location:879 → 910
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl29593
    Location:74 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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