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CAPN10-DT CAPN10 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101752400, updated on 29-Mar-2023

Summary

Official Symbol
CAPN10-DTprovided by HGNC
Official Full Name
CAPN10 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48839
See related
Ensembl:ENSG00000260942 AllianceGenome:HGNC:48839
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
locus959; CAPN10-AS1
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Genomic context

See CAPN10-DT in Genome Data Viewer
Location:
2q37.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (240582750..240586316, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (241076774..241080341, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (241522167..241525733, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241508987-241509625 Neighboring gene arginyl aminopeptidase like 1 Neighboring gene Sharpr-MPRA regulatory region 11586 Neighboring gene Sharpr-MPRA regulatory region 5965 Neighboring gene calpain 10 Neighboring gene G protein-coupled receptor 35 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241564851-241565357

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.
EBI GWAS Catalog

General gene information

Other Names

  • CAPN10 antisense RNA 1 (head to head)
  • locus 959

Clone Names

  • DKFZp667B1513

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103792.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124862
    Related
    ENST00000567819.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    240582750..240586316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    241076774..241080341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)