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TRIM39.1 tripartite motif containing 39.1 [ Gallus gallus (chicken) ]

Gene ID: 101747534, updated on 10-Oct-2024

Summary

Official Symbol
TRIM39.1provided by CGNC
Official Full Name
tripartite motif containing 39.1provided by CGNC
Primary source
CGNC:54363
See related
Ensembl:ENSGALG00010002798
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

See TRIM39.1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 16 NC_052547.1 (2130215..2135254, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 16 NC_052588.1 (1031341..1036380, complement)

Chromosome 16 - NC_052547.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106968 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene tripartite motif containing 39.2, MHCB region Neighboring gene tripartite motif containing 27.2, MHCB region Neighboring gene tripartite motif containing 27.1, MHCB region Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

General protein information

Preferred Names
tripartite motif protein 39
Names
BR
E3 ubiquitin-protein ligase TRIM39-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001312883.1NP_001299812.1  tripartite motif protein 39

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000283
    UniProtKB/TrEMBL
    A0A1D5PLQ8, A5HUK3, E6N1V5
    Related
    ENSGALP00010003990.1, ENSGALT00010006481.1
    Conserved Domains (1) summary
    cd12888
    Location:120290
    SPRY_PRY_TRIM7_like; PRY/SPRY domain in tripartite motif-binding protein 7 (TRIM7)-like, including TRIM7, TRIM10, TRIM15, TRIM26, TRIM39, TRIM41

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052547.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2130215..2135254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015294944.4XP_015150430.1  tripartite motif protein 39 isoform X1

    UniProtKB/TrEMBL
    A5HUK3
    Conserved Domains (1) summary
    cd12888
    Location:72242
    SPRY_PRY_TRIM7_like; PRY/SPRY domain in tripartite motif-binding protein 7 (TRIM7)-like, including TRIM7, TRIM10, TRIM15, TRIM26, TRIM39, TRIM41

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052588.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1031341..1036380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928514.1XP_046784470.1  tripartite motif protein 39 isoform X1