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plxdc1 plexin domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 101732893, updated on 8-Mar-2024

Summary

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Official Symbol
plxdc1provided by Xenbase
Official Full Name
plexin domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-856488
See related
Ensembl:ENSXETG00000040067
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (10489389..10538494)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (3569266..3615151)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 5C Neighboring gene dickkopf x Neighboring gene F-box protein 47 Neighboring gene uncharacterized LOC116408066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
plexin domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    10489389..10538494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012952930.2 → XP_012808384.1  plexin domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QLG8, A0A803JXI1
    Related
    ENSXETP00000112731.1, ENSXETT00000117010.1
    Conserved Domains (3) summary
    smart00423
    Location:297 → 340
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam05283
    Location:296 → 426
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    cl02648
    Location:157 → 266
    NIDO; Nidogen-like

  2. XM_004918671.3 → XP_004918728.1  plexin domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QLG8, A0A8J0R3U2
    Related
    ENSXETP00000073819.2, ENSXETT00000088974.2
    Conserved Domains (3) summary
    smart00423
    Location:297 → 340
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam05283
    Location:296 → 426
    MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    cl02648
    Location:157 → 266
    NIDO; Nidogen-like
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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