Format

Send to:

Choose Destination

LOC101731515 collagen alpha-1(I) chain-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 101731515, updated on 20-Jun-2018

Summary

Gene symbol
LOC101731515
Gene description
collagen alpha-1(I) chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana

Genomic context

See LOC101731515 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (148301149..148306809, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668232.1 (51116933..51122593)

Chromosome 1 - NC_030677.1Genomic Context describing neighboring genes Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene matrix metallopeptidase 17 Neighboring gene splicing factor SWAP Neighboring gene uncharacterized LOC101731247

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
collagen alpha-1(I) chain-like; collagen alpha-1(III) chain-like

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030677.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    148301149..148306809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004910555.2XP_004910612.1  collagen alpha-1(I) chain-like isoform X2

    Conserved Domains (1) summary
    cd00229
    Location:491617
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
  2. XM_004910554.3XP_004910611.1  collagen alpha-1(III) chain-like isoform X1

    Conserved Domains (1) summary
    cl00213
    Location:579737
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
Support Center