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tshz1 teashirt zinc finger homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 101730769, updated on 8-Mar-2024

Summary

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Official Symbol
tshz1provided by Xenbase
Official Full Name
teashirt zinc finger homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-13579725
See related
Ensembl:ENSXETG00000039942
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tsh1; XTsh1a; tshz1-a; tshz1-b; ny-co-33; sdccag33; teashirt1
Orthologs
human mouse all
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Genomic context

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See tshz1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (99601138..99666096, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683375.1 (1063300..1138184, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 236 Neighboring gene zinc finger protein 516 Neighboring gene prostaglandin reductase 3 Neighboring gene zinc finger protein 407

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
teashirt homolog 1
Names
teashirt 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    99601138..99666096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004915263.4 → XP_004915320.1  teashirt homolog 1

    See identical proteins and their annotated locations for XP_004915320.1

    UniProtKB/TrEMBL
    A0A6I8RHT1, A0A6I8SMJ4
    Related
    ENSXETP00000081127.2, ENSXETT00000083273.2
    Conserved Domains (2) summary
    cd00086
    Location:885 → 953
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:250 → 272
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_004915262.4 → XP_004915319.1  teashirt homolog 1

    See identical proteins and their annotated locations for XP_004915319.1

    UniProtKB/TrEMBL
    A0A6I8RHT1, A0A6I8SMJ4
    Conserved Domains (2) summary
    cd00086
    Location:885 → 953
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:250 → 272
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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