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Nphp1 nephrocystin 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101725630, updated on 1-Mar-2025
Gene symbol
Nphp1
Gene description
nephrocystin 1
See related
Ensembl:ENSHGLG00000009816 RGD:18928395
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Nphp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624749.1 (1725515..1779787)

NW_004624749.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349017 Neighboring gene two pore calcium channel protein 2-like Neighboring gene ras-related protein Rab-28 pseudogene Neighboring gene mal, T cell differentiation protein like Neighboring gene mal, T cell differentiation protein

Genomic Sequence:
NW_004624749 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization involved in establishment of planar polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
nephrocystin-1

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624749.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1725515..1779787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004844331.3 → XP_004844388.1  nephrocystin-1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6JUD7, A0AAX6P5U7
    Related
    ENSHGLP00000013751.1, ENSHGLT00000013892.1
    Conserved Domains (1) summary
    cd11770
    Location:173 → 226
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  2. XM_004844332.3 → XP_004844389.1  nephrocystin-1 isoform X2

    UniProtKB/TrEMBL
    A0A0P6JUD7, A0AAX6P5P9
    Conserved Domains (1) summary
    cd11770
    Location:173 → 226
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  3. XM_021257989.1 → XP_021113648.1  nephrocystin-1 isoform X4

    UniProtKB/TrEMBL
    A0AAX6SZE6
    Conserved Domains (1) summary
    cd11770
    Location:173 → 226
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  4. XM_021257988.1 → XP_021113647.1  nephrocystin-1 isoform X3

    UniProtKB/TrEMBL
    A0A0P6JUD7, A0AAX6T0T5
    Conserved Domains (1) summary
    cd11770
    Location:160 → 213
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)
Nucleotide Protein
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