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Atxn3 ataxin 3 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101725084, updated on 1-Mar-2025

Summary

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Gene symbol
Atxn3
Gene description
ataxin 3
See related
Ensembl:ENSHGLG00000016988 RGD:18901850
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Atxn3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (8685994..8726329, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein of 70 kDa pseudogene Neighboring gene isobutyryl-CoA dehydrogenase, mitochondrial pseudogene Neighboring gene thyroid hormone receptor interactor 11 Neighboring gene S-adenosylmethionine decarboxylase proenzyme pseudogene Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene cleavage and polyadenylation specific factor 2 Neighboring gene solute carrier family 24 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    8685994..8726329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004837016.2 → XP_004837073.1  ataxin-3 isoform X3

    UniProtKB/TrEMBL
    A0AAX6NU67
    Related
    ENSHGLP00000023830.1, ENSHGLT00000024048.1
    Conserved Domains (2) summary
    pfam02099
    Location:9 → 163
    Josephin; Josephin
    pfam16619
    Location:263 → 321
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  2. XM_021244781.1 → XP_021100440.1  ataxin-3 isoform X2

    UniProtKB/TrEMBL
    A0AAX6RTT9
    Conserved Domains (2) summary
    pfam02099
    Location:11 → 162
    Josephin
    pfam16619
    Location:262 → 320
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  3. XM_021244782.1 → XP_021100441.1  ataxin-3 isoform X4

    UniProtKB/TrEMBL
    A0AAX6RUP7
    Conserved Domains (2) summary
    pfam02099
    Location:11 → 129
    Josephin
    pfam16619
    Location:226 → 284
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  4. XM_021244783.1 → XP_021100442.1  ataxin-3 isoform X5

    UniProtKB/TrEMBL
    A0AAX6RUZ0
    Conserved Domains (3) summary
    pfam02099
    Location:2 → 118
    Josephin
    pfam02809
    Location:179 → 194
    UIM; Ubiquitin interaction motif
    pfam16619
    Location:218 → 276
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

  5. XM_021244777.1 → XP_021100436.1  ataxin-3 isoform X1

    UniProtKB/TrEMBL
    A0AAX6RT75
    Conserved Domains (2) summary
    pfam02099
    Location:11 → 163
    Josephin
    pfam16619
    Location:263 → 321
    SUIM_assoc; Unstructured region C-term to UIM in Ataxin3

RNA

  1. XR_002389536.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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