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Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101724591, updated on 8-Mar-2024

Summary

Gene symbol
Sel1l
Gene description
SEL1L adaptor subunit of SYVN1 ubiquitin ligase
Locus tag
GW7_05447
See related
Ensembl:ENSHGLG00000018590
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
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Genomic context

See Sel1l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (20532676..20596847)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene protein lin-28 homolog A pseudogene Neighboring gene PEST proteolytic signal-containing nuclear protein-like Neighboring gene solute carrier family 25 member 38 pseudogene Neighboring gene uncharacterized LOC101725459 Neighboring gene stonin 2 Neighboring gene small nuclear ribonucleoprotein F-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in ERAD pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
protein sel-1 homolog 1
Names
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase
SEL1L, ERAD E3 ligase adaptor subunit
sel-1-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    20532676..20596847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004837100.2XP_004837157.1  protein sel-1 homolog 1 isoform X1

    See identical proteins and their annotated locations for XP_004837157.1

    UniProtKB/TrEMBL
    G5AJR8
    Related
    ENSHGLP00000026116.1, ENSHGLT00000026348.1
    Conserved Domains (4) summary
    smart00059
    Location:119167
    FN2; Fibronectin type 2 domain
    smart00671
    Location:482517
    SEL1; Sel1-like repeats
    COG0790
    Location:186452
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:392421
    SLR; SLR repeat [structural motif]
  2. XM_021245472.1XP_021101131.1  protein sel-1 homolog 1 isoform X2

    Conserved Domains (3) summary
    smart00059
    Location:119167
    FN2; Fibronectin type 2 domain
    COG0790
    Location:391672
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:406435
    SLR; SLR repeat [structural motif]
  3. XM_004837102.3XP_004837159.1  protein sel-1 homolog 1 isoform X3

    Conserved Domains (4) summary
    smart00671
    Location:348383
    SEL1; Sel1-like repeats
    COG0790
    Location:52318
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:258287
    SLR; SLR repeat [structural motif]
    pfam00040
    Location:333
    fn2; Fibronectin type II domain