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Capn15 calpain 15 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101721734, updated on 8-Mar-2024

Summary

Gene symbol
Capn15
Gene description
calpain 15
See related
Ensembl:ENSHGLG00000004746
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
Solh
Orthologs
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Genomic context

Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624913.1 (1343471..1367998)

NW_004624913.1Genomic Context describing neighboring genes Neighboring gene 2,4-dienoyl-CoA reductase 2 Neighboring gene RAB11 family interacting protein 3 Neighboring gene leukocyte receptor cluster member 1 pseudogene Neighboring gene uncharacterized LOC110347313 Neighboring gene proline rich 35 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624913 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
calpain-15
Names
small optic lobes homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624913.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1343471..1367998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021251336.1XP_021106995.1  calpain-15 isoform X6

    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:538853
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:406425
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:19421
    Atrophin-1; Atrophin-1 family
  2. XM_021251333.1XP_021106992.1  calpain-15 isoform X2

    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:538851
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:406425
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:19421
    Atrophin-1; Atrophin-1 family
  3. XM_021251332.1XP_021106991.1  calpain-15 isoform X1

    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:538853
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:406425
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:19421
    Atrophin-1; Atrophin-1 family
  4. XM_021251334.1XP_021106993.1  calpain-15 isoform X4

    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:538811
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:406425
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:19421
    Atrophin-1; Atrophin-1 family
  5. XM_021251338.1XP_021106997.1  calpain-15 isoform X8

    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:365680
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00025
    Location:7392
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00029
    Location:233252
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  6. XM_004873775.3XP_004873832.1  calpain-15 isoform X3

    See identical proteins and their annotated locations for XP_004873832.1

    Related
    ENSHGLP00000006490.1, ENSHGLT00000006572.1
    Conserved Domains (4) summary
    smart00547
    Location:7195
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:538853
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00025
    Location:165186
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00029
    Location:406425
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
  7. XM_021251337.1XP_021106996.1  calpain-15 isoform X7

    Conserved Domains (4) summary
    smart00547
    Location:529
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:472787
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:340359
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:73355
    Atrophin-1; Atrophin-1 family
  8. XM_021251335.1XP_021106994.1  calpain-15 isoform X5

    Conserved Domains (4) summary
    smart00547
    Location:2145
    ZnF_RBZ; Zinc finger domain
    cd00044
    Location:488803
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    sd00029
    Location:356375
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cl26464
    Location:89371
    Atrophin-1; Atrophin-1 family