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Katnb1 katanin regulatory subunit B1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101720378, updated on 1-Mar-2025
Gene symbol
Katnb1
Gene description
katanin regulatory subunit B1
See related
Ensembl:ENSHGLG00000013445 RGD:18910661
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
all
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Try the new Transcripts and proteins table
See Katnb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624746.1 (28360461..28381545, complement)

NW_004624746.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106009268 Neighboring gene kinesin family member C3 Neighboring gene dynein regulatory complex subunit 7 Neighboring gene adhesion G protein-coupled receptor G3

Genomic Sequence:
NW_004624746 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of katanin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
katanin p80 WD40 repeat-containing subunit B1
Names
katanin p80 WD40-containing subunit B1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624746.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    28360461..28381545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021256993.1 → XP_021112652.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6JDJ8, G5AUF5
    Conserved Domains (3) summary
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  2. XM_021256996.1 → XP_021112655.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6JDJ8, G5AUF5
    Related
    ENSHGLP00000018774.1, ENSHGLT00000018961.1
    Conserved Domains (3) summary
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  3. XM_004843142.2 → XP_004843199.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    See identical proteins and their annotated locations for XP_004843199.1

    UniProtKB/TrEMBL
    A0A0P6JDJ8, G5AUF5
    Related
    ENSHGLP00000018773.1, ENSHGLT00000018960.1
    Conserved Domains (3) summary
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  4. XM_021256995.1 → XP_021112654.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6JDJ8, G5AUF5
    Conserved Domains (3) summary
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  5. XM_004843144.2 → XP_004843201.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

    See identical proteins and their annotated locations for XP_004843201.1

    UniProtKB/TrEMBL
    A0A0P6JDJ8, G5AUF5
    Conserved Domains (3) summary
    cd00200
    Location:7 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:67 → 103
    7WD40; WD40 repeat [structural motif]
    pfam13925
    Location:497 → 648
    Katanin_con80; con80 domain of Katanin

  6. XM_004843145.3 → XP_004843202.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

    UniProtKB/TrEMBL
    A0AAX6P3Z2
    Conserved Domains (5) summary
    COG2319
    Location:2 → 156
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:2 → 156
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05104
    Location:268 → 356
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    pfam13925
    Location:396 → 547
    Katanin_con80; con80 domain of Katanin
    sd00039
    Location:7 → 43
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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