U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sorcs1 sortilin related VPS10 domain containing receptor 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101720277, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Sorcs1
Gene description
sortilin related VPS10 domain containing receptor 1
Locus tag
GW7_13709
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624831.1 (5433671..5901911, complement)

NW_004624831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110346021 Neighboring gene ribosomal L1 domain-containing protein 1-like Neighboring gene uncharacterized LOC110346039 Neighboring gene uncharacterized LOC110346033

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004624831 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
VPS10 domain-containing receptor SorCS1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624831.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    5433671..5901911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021245562.1 → XP_021101221.1  VPS10 domain-containing receptor SorCS1 isoform X4

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  2. XM_021245566.1 → XP_021101225.1  VPS10 domain-containing receptor SorCS1 isoform X6

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  3. XM_021245565.1 → XP_021101224.1  VPS10 domain-containing receptor SorCS1 isoform X5

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  4. XM_021245564.1 → XP_021101223.1  VPS10 domain-containing receptor SorCS1 isoform X5

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  5. XM_021245563.1 → XP_021101222.1  VPS10 domain-containing receptor SorCS1 isoform X5

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  6. XM_021245560.1 → XP_021101219.1  VPS10 domain-containing receptor SorCS1 isoform X1

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  7. XM_021245561.1 → XP_021101220.1  VPS10 domain-containing receptor SorCS1 isoform X2

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  8. XM_021245567.1 → XP_021101226.1  VPS10 domain-containing receptor SorCS1 isoform X7

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (2) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    pfam00801
    Location:768 → 841
    PKD; PKD domain

  9. XM_013066085.2 → XP_012921539.1  VPS10 domain-containing receptor SorCS1 isoform X3

    UniProtKB/TrEMBL
    G5C600
    Conserved Domains (4) summary
    smart00602
    Location:157 → 754
    VPS10; VPS10 domain
    cd15482
    Location:489 → 583
    Sialidase_non-viral; Non-viral sialidases
    pfam00801
    Location:768 → 841
    PKD; PKD domain
    pfam15901
    Location:599 → 754
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.