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Prpf19 pre-mRNA processing factor 19 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101719630, updated on 1-Mar-2025
Gene symbol
Prpf19
Gene description
pre-mRNA processing factor 19
See related
Ensembl:ENSHGLG00000003934 RGD:18917782
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
all
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See Prpf19 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624926.1 (268965..274634, complement)

NW_004624926.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 86 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene transmembrane protein 109 Neighboring gene transmembrane protein 132A Neighboring gene solute carrier family 15 member 3

Genomic Sequence:
NW_004624926 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pre-mRNA-processing factor 19

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624926.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    268965..274634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004874270.3 → XP_004874327.1  pre-mRNA-processing factor 19

    UniProtKB/TrEMBL
    A0A0P6JDG2
    Related
    ENSHGLP00000005370.1, ENSHGLT00000005440.1
    Conserved Domains (5) summary
    smart00504
    Location:2 → 68
    Ubox; Modified RING finger domain
    COG2319
    Location:224 → 504
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:223 → 503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08606
    Location:69 → 132
    Prp19; Prp19/Pso4-like
    sd00039
    Location:224 → 262
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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