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Pcdh9 protocadherin 9 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101716923, updated on 1-Mar-2025
Gene symbol
Pcdh9
Gene description
protocadherin 9
Locus tag
GW7_13193
See related
Ensembl:ENSHGLG00000007234 RGD:18935011
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Pcdh9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624748.1 (27604426..28543256, complement)

NW_004624748.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349011 Neighboring gene uncharacterized LOC110349012 Neighboring gene uncharacterized LOC110349013 Neighboring gene protein FAM170A-like Neighboring gene zinc finger protein OZF-like

Genomic Sequence:
NW_004624748 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protocadherin-9
Names
Protocadherin-9

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624748.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    27604426..28543256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004844285.2 → XP_004844342.1  protocadherin-9 isoform X3

    UniProtKB/TrEMBL
    A0AAX6P634, G5APG5
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_004844283.2 → XP_004844340.1  protocadherin-9 isoform X1

    UniProtKB/TrEMBL
    A0AAX6P5J4
    Related
    ENSHGLP00000010082.1, ENSHGLT00000010194.1
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_021257934.1 → XP_021113593.1  protocadherin-9 isoform X7

    UniProtKB/TrEMBL
    A0AAX6T0S5
    Conserved Domains (2) summary
    cd11304
    Location:357 → 452
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:558 → 778
    Protocadherin

  4. XM_004844286.2 → XP_004844343.1  protocadherin-9 isoform X4

    UniProtKB/TrEMBL
    A0AAX6P5D1, G5APG5
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  5. XM_004844284.2 → XP_004844341.1  protocadherin-9 isoform X2

    UniProtKB/TrEMBL
    A0AAX6P6C2, G5APG5
    Related
    ENSHGLP00000010083.1, ENSHGLT00000010195.1
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  6. XM_021257933.1 → XP_021113592.1  protocadherin-9 isoform X6

    UniProtKB/TrEMBL
    A0AAX6SV06, G5APG5
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  7. XM_004844287.2 → XP_004844344.1  protocadherin-9 isoform X5

    UniProtKB/TrEMBL
    A0AAX6P5E0, G5APG5
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
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