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Atg2b autophagy related 2B [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101716535, updated on 8-Mar-2024

Summary

Gene symbol
Atg2b
Gene description
autophagy related 2B
See related
Ensembl:ENSHGLG00000015073
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
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Genomic context

See Atg2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (7015356..7097392)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like Neighboring gene adenylate kinase 7 Neighboring gene GSK3B interacting protein Neighboring gene alpha-1-antiproteinase S Neighboring gene serpin A11

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
autophagy-related protein 2 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    7015356..7097392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004836993.3XP_004837050.1  autophagy-related protein 2 homolog B isoform X1

    UniProtKB/TrEMBL
    G5B497
    Related
    ENSHGLP00000021099.1, ENSHGLT00000021302.1
    Conserved Domains (3) summary
    pfam09333
    Location:19792073
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11105
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:12391359
    ATG2_CAD; Autophagy-related protein 2 CAD motif
  2. XM_004836995.3XP_004837052.1  autophagy-related protein 2 homolog B isoform X2

    UniProtKB/TrEMBL
    G5B497
    Conserved Domains (3) summary
    pfam09333
    Location:19172011
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11105
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam13329
    Location:11771297
    ATG2_CAD; Autophagy-related protein 2 CAD motif