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Col6a2 collagen type VI alpha 2 chain [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101711621, updated on 8-Mar-2024

Summary

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Gene symbol
Col6a2
Gene description
collagen type VI alpha 2 chain
Locus tag
GW7_10758
See related
Ensembl:ENSHGLG00000009116
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Col6a2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624745.1 (31246458..31272403)

NW_004624745.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110348695 Neighboring gene uncharacterized LOC110348696 Neighboring gene pleiotropic regulator 1 pseudogene Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene spermatogenesis and centriole associated 1 like Neighboring gene lanosterol synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624745 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-2(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624745.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    31246458..31272403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004842535.2 → XP_004842592.1  collagen alpha-2(VI) chain isoform X1

    See identical proteins and their annotated locations for XP_004842592.1

    UniProtKB/TrEMBL
    A0A0P6JLU0, G5C7V8
    Related
    ENSHGLP00000012747.1, ENSHGLT00000012884.1
    Conserved Domains (4) summary
    pfam01391
    Location:458 → 515
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:613 → 804
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam00092
    Location:834 → 1008
    VWA; von Willebrand factor type A domain
    cl00057
    Location:45 → 232
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_004842537.2 → XP_004842594.1  collagen alpha-2(VI) chain isoform X2

    UniProtKB/TrEMBL
    A0A0P6JLU0, G5C7V8
    Conserved Domains (3) summary
    pfam01391
    Location:458 → 515
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:613 → 804
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    cl00057
    Location:45 → 232
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_004842536.2 → XP_004842593.1  collagen alpha-2(VI) chain isoform X1

    See identical proteins and their annotated locations for XP_004842593.1

    UniProtKB/TrEMBL
    A0A0P6JLU0, G5C7V8
    Conserved Domains (4) summary
    pfam01391
    Location:458 → 515
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:613 → 804
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
    pfam00092
    Location:834 → 1008
    VWA; von Willebrand factor type A domain
    cl00057
    Location:45 → 232
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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