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Scn9a sodium voltage-gated channel alpha subunit 9 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101710863, updated on 20-Jun-2018

Summary

Gene symbol
Scn9a
Gene description
sodium voltage-gated channel alpha subunit 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
NaV1.7
Orthologs

Genomic context

See Scn9a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624787.1 (3995319..4148230, complement)

NW_004624787.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC106010469 Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B-like Neighboring gene uncharacterized LOC101707404 Neighboring gene sodium voltage-gated channel alpha subunit 7

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624787 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624787.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    3995319..4148230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013076951.2XP_012932405.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14581510
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12261466
    Ion_trans; Ion transport protein
    pfam06512
    Location:9821187
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488607
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17821837
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_021238552.1XP_021094211.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:13291381
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:10621337
    Ion_trans; Ion transport protein
    pfam06512
    Location:8531058
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:359552
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:16451708
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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