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Thumpd2 THUMP domain containing 2 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101710506, updated on 20-Jun-2018

Summary

Gene symbol
Thumpd2
Gene description
THUMP domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs

Genomic context

See Thumpd2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624738.1 (21238535..21287491, complement)

NW_004624738.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101708837 Neighboring gene transmembrane protein 178A Neighboring gene AP-1 complex subunit sigma-2 pseudogene Neighboring gene solute carrier family 8 member A1 Neighboring gene uncharacterized LOC106008916

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624738 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624738.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    21238535..21287491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004839341.3XP_004839398.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (2) summary
    smart00981
    Location:186256
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:273418
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_021253764.1XP_021109423.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    smart00981
    Location:127197
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:214359
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  3. XM_021253762.1XP_021109421.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    smart00981
    Location:162232
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:249394
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  4. XM_021253763.1XP_021109422.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    smart00981
    Location:127197
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:214359
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  5. XM_021253765.1XP_021109424.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    smart00981
    Location:127197
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:214359
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  6. XM_021253766.1XP_021109425.1  THUMP domain-containing protein 2 isoform X4

    Conserved Domains (2) summary
    cl12076
    Location:147254
    THUMP; THUMP domain, predicted to bind RNA
    cl28094
    Location:202420
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
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