U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Setd3 SET domain containing 3, actin N3(tau)-histidine methyltransferase [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101710371, updated on 1-Mar-2025

Summary

Go to the top of the page Help
Gene symbol
Setd3
Gene description
SET domain containing 3, actin N3(tau)-histidine methyltransferase
See related
Ensembl:ENSHGLG00000009992 RGD:18933529
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Setd3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (4392627..4468961)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101709203 Neighboring gene uncharacterized LOC101709423 Neighboring gene coiled-coil domain containing 85C Neighboring gene cyclin K Neighboring gene uncharacterized LOC106007762 Neighboring gene BCL11 transcription factor B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-L-histidine N-tele-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine dimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine monomethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-lysine trimethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
histone-lysine N-methyltransferase setd3
Names
SET domain containing 3, actin histidine methyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    4392627..4468961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004836978.2 → XP_004837035.1  histone-lysine N-methyltransferase setd3 isoform X2

    See identical proteins and their annotated locations for XP_004837035.1

    UniProtKB/TrEMBL
    A0A0P6JCN2, G5B4A5
    Conserved Domains (2) summary
    pfam00856
    Location:105 → 135
    SET; SET domain
    pfam09273
    Location:353 → 475
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  2. XM_021244485.1 → XP_021100144.1  histone-lysine N-methyltransferase setd3 isoform X4

    UniProtKB/TrEMBL
    A0AAX6RSW3, G5B4A5
    Conserved Domains (2) summary
    pfam00856
    Location:100 → 134
    SET; SET domain
    pfam09273
    Location:345 → 470
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  3. XM_004836979.2 → XP_004837036.1  histone-lysine N-methyltransferase setd3 isoform X2

    See identical proteins and their annotated locations for XP_004837036.1

    UniProtKB/TrEMBL
    A0A0P6JCN2, G5B4A5
    Related
    ENSHGLP00000013995.1, ENSHGLT00000014138.1
    Conserved Domains (2) summary
    pfam00856
    Location:105 → 135
    SET; SET domain
    pfam09273
    Location:353 → 475
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  4. XM_021244481.1 → XP_021100140.1  histone-lysine N-methyltransferase setd3 isoform X4

    UniProtKB/TrEMBL
    A0AAX6RSW3, G5B4A5
    Conserved Domains (2) summary
    pfam00856
    Location:100 → 134
    SET; SET domain
    pfam09273
    Location:345 → 470
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  5. XM_004836981.3 → XP_004837038.1  histone-lysine N-methyltransferase setd3 isoform X5

    UniProtKB/TrEMBL
    A0AAX6NU86
    Conserved Domains (2) summary
    pfam00856
    Location:110 → 140
    SET; SET domain
    pfam09273
    Location:358 → 397
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  6. XM_004836980.3 → XP_004837037.1  histone-lysine N-methyltransferase setd3 isoform X3

    UniProtKB/TrEMBL
    A0AAX6NU79, G5B4A5
    Conserved Domains (2) summary
    pfam00856
    Location:105 → 135
    SET; SET domain
    pfam09273
    Location:353 → 475
    Rubis-subs-bind; Rubisco LSMT substrate-binding

  7. XM_004836977.3 → XP_004837034.1  histone-lysine N-methyltransferase setd3 isoform X1

    UniProtKB/TrEMBL
    A0AAX6NU71, G5B4A5
    Conserved Domains (2) summary
    pfam00856
    Location:110 → 140
    SET; SET domain
    pfam09273
    Location:358 → 480
    Rubis-subs-bind; Rubisco LSMT substrate-binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases