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Ctcf CCCTC-binding factor [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101709585, updated on 1-Mar-2025
Gene symbol
Ctcf
Gene description
CCCTC-binding factor
Locus tag
GW7_02361
See related
Ensembl:ENSHGLG00000010775 RGD:18909137
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
all
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See Ctcf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624746.1 (18705017..18760345, complement)

NW_004624746.1Genomic Context describing neighboring genes Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene ACD shelterin complex subunit and telomerase recruitment factor Neighboring gene uncharacterized LOC106009246 Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene agouti related neuropeptide

Genomic Sequence:
NW_004624746 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcriptional repressor CTCF
Names
Transcriptional repressor CTCF

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624746.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    18705017..18760345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021256850.1 → XP_021112509.1  transcriptional repressor CTCF isoform X5

    UniProtKB/TrEMBL
    A0AAX6SUJ0
    Conserved Domains (3) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021256848.1 → XP_021112507.1  transcriptional repressor CTCF isoform X3

    UniProtKB/TrEMBL
    A0AAX6SXF7
    Conserved Domains (3) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain

  3. XM_021256847.1 → XP_021112506.1  transcriptional repressor CTCF isoform X1

    UniProtKB/TrEMBL
    G5C665
    Conserved Domains (3) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:509 → 534
    zf-H2C2_2; Zinc-finger double domain

  4. XM_004843024.3 → XP_004843081.1  transcriptional repressor CTCF isoform X1

    See identical proteins and their annotated locations for XP_004843081.1

    UniProtKB/TrEMBL
    G5C665
    Related
    ENSHGLP00000015041.1, ENSHGLT00000015195.1
    Conserved Domains (3) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:509 → 534
    zf-H2C2_2; Zinc-finger double domain

  5. XM_021256849.1 → XP_021112508.1  transcriptional repressor CTCF isoform X4

    UniProtKB/TrEMBL
    A0AAX6SVW0
    Conserved Domains (3) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:280 → 305
    zf-H2C2_2; Zinc-finger double domain

  6. XM_004843026.3 → XP_004843083.1  transcriptional repressor CTCF isoform X2

    UniProtKB/TrEMBL
    A0A0P6JW79
    Related
    ENSHGLP00000015040.1, ENSHGLT00000015194.1
    Conserved Domains (4) summary
    COG5048
    Location:366 → 500
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:268 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06750
    Location:438 → 483
    DiS_P_DiS; Bacterial Peptidase A24 N-terminal domain
    pfam13465
    Location:394 → 418
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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