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Vps41 VPS41 subunit of HOPS complex [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101708027, updated on 1-Mar-2025
Gene symbol
Vps41
Gene description
VPS41 subunit of HOPS complex
See related
Ensembl:ENSHGLG00000017533 RGD:18912171
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Vps41 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624740.1 (22121772..22297514)

NW_004624740.1Genomic Context describing neighboring genes Neighboring gene threonylcarbamoyladenosine tRNA methylthiotransferase pseudogene Neighboring gene POU class 6 homeobox 2 Neighboring gene uncharacterized LOC110348243 Neighboring gene uncharacterized LOC110348242 Neighboring gene uncharacterized LOC110348244 Neighboring gene probable G-protein coupled receptor 160

Genomic Sequence:
NW_004624740 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
vacuolar protein sorting-associated protein 41 homolog
Names
VPS41, HOPS complex subunit

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624740.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    22121772..22297514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004840263.3 → XP_004840320.1  vacuolar protein sorting-associated protein 41 homolog

    UniProtKB/TrEMBL
    A0A0P6K628, G5B6U0
    Related
    ENSHGLP00000024592.1, ENSHGLT00000024814.1
    Conserved Domains (4) summary
    smart00299
    Location:571 → 708
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:575 → 710
    Clathrin; Region in Clathrin and VPS
    sd00039
    Location:138 → 169
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 212
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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