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LOC101706577 40S ribosomal protein S4 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101706577, updated on 1-Mar-2025
Gene symbol
LOC101706577
Gene description
40S ribosomal protein S4
Locus tag
GW7_15480
See related
Ensembl:ENSHGLG00000010018 RGD:18918219
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
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Try the new Transcripts and proteins table
See LOC101706577 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624746.1 (11405195..11409159)

NW_004624746.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110348764 Neighboring gene adenosine deaminase tRNA specific 1 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene uncharacterized LOC106009243 Neighboring gene carbohydrate sulfotransferase 6

Genomic Sequence:
NW_004624746 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
40S ribosomal protein S4

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624746.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    11405195..11409159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004842832.2 → XP_004842889.1  40S ribosomal protein S4 isoform X3

    See identical proteins and their annotated locations for XP_004842889.1

    UniProtKB/TrEMBL
    G5B1L0, G5B5Y3
    Related
    ENSHGLP00000014029.1, ENSHGLT00000014172.1
    Conserved Domains (6) summary
    PLN00036
    Location:1 → 260
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:51 → 112
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    cd06087
    Location:175 → 229
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:95 → 169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:3 → 39
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:212 → 259
    40S_S4_C; 40S ribosomal protein S4 C-terminus

  2. XM_004842830.2 → XP_004842887.1  40S ribosomal protein S4 isoform X1

    UniProtKB/TrEMBL
    A0AAX6P3Q7, G5B1L0
    Conserved Domains (6) summary
    PLN00036
    Location:13 → 272
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:63 → 124
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    cd06087
    Location:187 → 241
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:107 → 181
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:15 → 51
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:224 → 271
    40S_S4_C; 40S ribosomal protein S4 C-terminus

  3. XM_004842831.2 → XP_004842888.1  40S ribosomal protein S4 isoform X2

    UniProtKB/TrEMBL
    A0AAX6P3K7, G5B1L0
    Conserved Domains (6) summary
    PLN00036
    Location:8 → 267
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:58 → 119
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    cd06087
    Location:182 → 236
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:102 → 176
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:10 → 46
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:219 → 266
    40S_S4_C; 40S ribosomal protein S4 C-terminus
Nucleotide Protein
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