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Srsf5 serine and arginine rich splicing factor 5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101703416, updated on 8-Mar-2024

Summary

Gene symbol
Srsf5
Gene description
serine and arginine rich splicing factor 5
Locus tag
GW7_02734
See related
Ensembl:ENSHGLG00000010147
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
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Genomic context

See Srsf5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (31309647..31314923, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene CMP-sialic acid transporter pseudogene Neighboring gene solute carrier family 10 member 1 Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene Neighboring gene RING finger protein 11 pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
serine/arginine-rich splicing factor 5
Names
Splicing factor, arginine/serine-rich 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    31309647..31314923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021247211.1XP_021102870.1  serine/arginine-rich splicing factor 5 isoform X2

    Conserved Domains (2) summary
    cd12337
    Location:571
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:108178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
  2. XM_004837315.2XP_004837372.1  serine/arginine-rich splicing factor 5 isoform X1

    See identical proteins and their annotated locations for XP_004837372.1

    UniProtKB/TrEMBL
    G5BQM4
    Related
    ENSHGLP00000014203.1, ENSHGLT00000014346.1
    Conserved Domains (2) summary
    cd12337
    Location:571
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:108178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
  3. XM_021247208.1XP_021102867.1  serine/arginine-rich splicing factor 5 isoform X1

    UniProtKB/TrEMBL
    G5BQM4
    Conserved Domains (2) summary
    cd12337
    Location:571
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:108178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
  4. XM_004837314.3XP_004837371.1  serine/arginine-rich splicing factor 5 isoform X1

    See identical proteins and their annotated locations for XP_004837371.1

    UniProtKB/TrEMBL
    G5BQM4
    Conserved Domains (2) summary
    cd12337
    Location:571
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:108178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
  5. XM_004837316.3XP_004837373.1  serine/arginine-rich splicing factor 5 isoform X1

    See identical proteins and their annotated locations for XP_004837373.1

    UniProtKB/TrEMBL
    G5BQM4
    Conserved Domains (2) summary
    cd12337
    Location:571
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:108178
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

RNA

  1. XR_002390362.1 RNA Sequence