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Zkscan5 zinc finger with KRAB and SCAN domains 5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101701573, updated on 1-Mar-2025
Gene symbol
Zkscan5
Gene description
zinc finger with KRAB and SCAN domains 5
See related
Ensembl:ENSHGLG00000009175 RGD:18904313
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Zkscan5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624740.1 (32944867..32970991)

NW_004624740.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit f Neighboring gene charged multivesicular body protein 4b pseudogene Neighboring gene zinc finger protein 394 Neighboring gene zinc finger protein 655 Neighboring gene zinc finger and SCAN domain containing 25

Genomic Sequence:
NW_004624740 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
zinc finger protein with KRAB and SCAN domains 5

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624740.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    32944867..32970991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004840522.2 → XP_004840579.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    See identical proteins and their annotated locations for XP_004840579.1

    UniProtKB/TrEMBL
    A0AAX6NZX3
    Conserved Domains (7) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:317 → 755
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:553 → 575
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:215 → 257
    KRAB; KRAB box
    pfam02023
    Location:47 → 134
    SCAN; SCAN domain
    pfam13465
    Location:392 → 415
    zf-H2C2_2; Zinc-finger double domain

  2. XM_004840521.2 → XP_004840578.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    See identical proteins and their annotated locations for XP_004840578.1

    UniProtKB/TrEMBL
    A0AAX6NZX3
    Related
    ENSHGLP00000012832.1, ENSHGLT00000012969.1
    Conserved Domains (7) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:317 → 755
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:553 → 575
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:215 → 257
    KRAB; KRAB box
    pfam02023
    Location:47 → 134
    SCAN; SCAN domain
    pfam13465
    Location:392 → 415
    zf-H2C2_2; Zinc-finger double domain

  3. XM_021254805.1 → XP_021110464.1  zinc finger protein with KRAB and SCAN domains 5 isoform X7

    UniProtKB/TrEMBL
    A0AAX6SNM0
    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    sd00017
    Location:352 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:350 → 372
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:214 → 258
    KRAB; KRAB box
    pfam13465
    Location:364 → 389
    zf-H2C2_2; Zinc-finger double domain

  4. XM_021254804.1 → XP_021110463.1  zinc finger protein with KRAB and SCAN domains 5 isoform X6

    UniProtKB/TrEMBL
    A0AAX6SP24
    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    sd00017
    Location:352 → 372
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:350 → 372
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:214 → 258
    KRAB; KRAB box
    pfam13465
    Location:392 → 416
    zf-H2C2_2; Zinc-finger double domain

  5. XM_021254799.1 → XP_021110458.1  zinc finger protein with KRAB and SCAN domains 5 isoform X3

    UniProtKB/TrEMBL
    A0AAX6SRR8
    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:481 → 765
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:493 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:214 → 258
    KRAB; KRAB box
    pfam13465
    Location:364 → 389
    zf-H2C2_2; Zinc-finger double domain

  6. XM_013070641.2 → XP_012926095.1  zinc finger protein with KRAB and SCAN domains 5 isoform X4

    UniProtKB/TrEMBL
    A0AAX6QT10
    Related
    ENSHGLP00000012833.1, ENSHGLT00000012970.1
    Conserved Domains (6) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:244 → 682
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:482 → 502
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:480 → 502
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:47 → 134
    SCAN; SCAN domain
    pfam13465
    Location:319 → 342
    zf-H2C2_2; Zinc-finger double domain

  7. XM_021254798.1 → XP_021110457.1  zinc finger protein with KRAB and SCAN domains 5 isoform X2

    UniProtKB/TrEMBL
    A0AAX6SLC8
    Conserved Domains (5) summary
    smart00431
    Location:46 → 155
    SCAN; leucine rich region
    COG5048
    Location:316 → 754
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:213 → 257
    KRAB; KRAB box
    pfam13465
    Location:790 → 814
    zf-H2C2_2; Zinc-finger double domain

  8. XM_021254803.1 → XP_021110462.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

    UniProtKB/TrEMBL
    A0AAX6SMM3
    Conserved Domains (3) summary
    COG5048
    Location:278 → 562
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:127 → 151
    zf-H2C2_2; Zinc-finger double domain

  9. XM_021254800.1 → XP_021110459.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

    UniProtKB/TrEMBL
    A0AAX6SMM3
    Conserved Domains (3) summary
    COG5048
    Location:278 → 562
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:127 → 151
    zf-H2C2_2; Zinc-finger double domain

  10. XM_021254801.1 → XP_021110460.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

    UniProtKB/TrEMBL
    A0AAX6SMM3
    Conserved Domains (3) summary
    COG5048
    Location:278 → 562
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:127 → 151
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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