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Stx1a syntaxin 1A [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101701572, updated on 1-Mar-2025
Gene symbol
Stx1a
Gene description
syntaxin 1A
See related
Ensembl:ENSHGLG00000010000 RGD:18920928
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Stx1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624740.1 (14104033..14120133)

NW_004624740.1Genomic Context describing neighboring genes Neighboring gene claudin 3 Neighboring gene abhydrolase domain containing 11 Neighboring gene BUD23 rRNA methyltransferase and ribosome maturation factor Neighboring gene DnaJ heat shock protein family (Hsp40) member C30 Neighboring gene VPS37D subunit of ESCRT-I

Genomic Sequence:
NW_004624740 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
syntaxin-1A

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624740.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    14104033..14120133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004840049.2 → XP_004840106.1  syntaxin-1A isoform X2

    See identical proteins and their annotated locations for XP_004840106.1

    UniProtKB/TrEMBL
    A0A0P6JWE4, A0AAX6NZA7
    Related
    ENSHGLP00000014005.1, ENSHGLT00000014148.1
    Conserved Domains (3) summary
    cd00179
    Location:46 → 197
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15880
    Location:207 → 275
    SNARE_syntaxin1; SNARE motif of syntaxin 1
    pfam00804
    Location:46 → 243
    Syntaxin; Syntaxin

  2. XM_021254400.1 → XP_021110059.1  syntaxin-1A isoform X1

    UniProtKB/TrEMBL
    A0AAX6SMH8
    Conserved Domains (1) summary
    pfam00804
    Location:46 → 242
    Syntaxin

  3. XM_021254401.1 → XP_021110060.1  syntaxin-1A isoform X3

    UniProtKB/TrEMBL
    A0AAX6SNN1
    Conserved Domains (1) summary
    pfam00804
    Location:46 → 243
    Syntaxin
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases