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Smoc1 SPARC related modular calcium binding 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101701555, updated on 8-Mar-2024

Summary

Gene symbol
Smoc1
Gene description
SPARC related modular calcium binding 1
See related
Ensembl:ENSHGLG00000010799
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
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Genomic context

See Smoc1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (31051637..31199911, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein COX16 homolog, mitochondrial Neighboring gene solute carrier family 8 member A3 Neighboring gene uncharacterized LOC110346822 Neighboring gene CMP-sialic acid transporter pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
SPARC-related modular calcium-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    31051637..31199911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004837310.3XP_004837367.1  SPARC-related modular calcium-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    G5BQM2
    Conserved Domains (5) summary
    smart00280
    Location:4287
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:237303
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:375436
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam00086
    Location:95158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159228
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
  2. XM_004837312.3XP_004837369.2  SPARC-related modular calcium-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    G5BQM2
    Related
    ENSHGLP00000015080.1, ENSHGLT00000015234.1
    Conserved Domains (5) summary
    smart00280
    Location:4287
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:226292
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:364425
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam00086
    Location:95158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159217
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
  3. XM_004837311.3XP_004837368.1  SPARC-related modular calcium-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    G5BQM2
    Conserved Domains (5) summary
    smart00280
    Location:4287
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:237303
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:375436
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam00086
    Location:95158
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:159228
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain