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Stx5 syntaxin 5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101700942, updated on 8-Mar-2024

Summary

Gene symbol
Stx5
Gene description
syntaxin 5
Locus tag
GW7_01788
See related
Ensembl:ENSHGLG00000003553
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
Syntaxin-5
Orthologs
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Genomic context

See Stx5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624926.1 (1270624..1286439, complement)

NW_004624926.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223 Neighboring gene nuclear RNA export factor 1 Neighboring gene microtubule-associated tumor suppressor 1 homolog pseudogene Neighboring gene microtubule-associated tumor suppressor 1 homolog pseudogene Neighboring gene WD repeat domain 74 Neighboring gene solute carrier family 3 member 2

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624926 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624926.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1270624..1286439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004874410.2XP_004874467.1  syntaxin-5 isoform X3

    See identical proteins and their annotated locations for XP_004874467.1

    UniProtKB/TrEMBL
    G5AYJ4
    Related
    ENSHGLP00000004838.1, ENSHGLT00000004902.1
    Conserved Domains (2) summary
    cd15844
    Location:266338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:5374
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
  2. XM_021251891.1XP_021107550.1  syntaxin-5 isoform X2

    Conserved Domains (3) summary
    pfam11416
    Location:5374
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    cl22856
    Location:247283
    SNARE; SNARE motif
    cl26014
    Location:80282
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
  3. XM_021251890.1XP_021107549.1  syntaxin-5 isoform X1

    Conserved Domains (3) summary
    pfam11416
    Location:5374
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    cl22856
    Location:266302
    SNARE; SNARE motif
    cl26014
    Location:80301
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
  4. XM_021251889.1XP_021107548.1  syntaxin-5 isoform X1

    Conserved Domains (3) summary
    pfam11416
    Location:5374
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    cl22856
    Location:266302
    SNARE; SNARE motif
    cl26014
    Location:80301
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
  5. XM_021251892.1XP_021107551.1  syntaxin-5 isoform X4

    Conserved Domains (2) summary
    pfam11416
    Location:5374
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
    cl22856
    Location:266304
    SNARE; SNARE motif