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Nxf1 nuclear RNA export factor 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101699957, updated on 8-Mar-2024

Summary

Gene symbol
Nxf1
Gene description
nuclear RNA export factor 1
Locus tag
GW7_01787
See related
Ensembl:ENSHGLG00000002936
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
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Genomic context

See Nxf1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624926.1 (1247940..1268968, complement)

NW_004624926.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223 Neighboring gene microtubule-associated tumor suppressor 1 homolog pseudogene Neighboring gene microtubule-associated tumor suppressor 1 homolog pseudogene Neighboring gene syntaxin 5 Neighboring gene WD repeat domain 74

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624926 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624926.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1247940..1268968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004874408.2XP_004874465.1  nuclear RNA export factor 1

    See identical proteins and their annotated locations for XP_004874465.1

    UniProtKB/TrEMBL
    G5AYJ3
    Related
    ENSHGLP00000003989.1, ENSHGLT00000004047.1
    Conserved Domains (7) summary
    smart00804
    Location:552614
    TAP_C; C-terminal domain of vertebrate Tap protein
    cd00116
    Location:202348
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00780
    Location:378534
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:220262
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:112194
    Tap-RNA_bind; Tap, RNA-binding
    pfam12799
    Location:287325
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:261321
    LRR_8; Leucine rich repeat