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Wsb1 WD repeat and SOCS box containing 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101697539, updated on 20-Jun-2018

Summary

Gene symbol
Wsb1
Gene description
WD repeat and SOCS box containing 1
Locus tag
GW7_13463
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs

Genomic context

See Wsb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624786.1 (81541..100585)

NW_004624786.1Genomic Context describing neighboring genes Neighboring gene nuclear protein localization protein 4 homolog pseudogene Neighboring gene nuclear protein localization protein 4 homolog pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene Neighboring gene cytoplasmic protein NCK1 pseudogene Neighboring gene uncharacterized LOC110344420

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004624786 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
WD repeat and SOCS box-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624786.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    81541..100585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013076897.2XP_012932351.1  WD repeat and SOCS box-containing protein 1 isoform X2

    Conserved Domains (3) summary
    COG2319
    Location:38238
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:59105
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:38238
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_004856958.2XP_004857015.1  WD repeat and SOCS box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0P6J162
    Conserved Domains (4) summary
    COG2319
    Location:38382
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:135388
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cd03746
    Location:382421
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:174212
    7WD40; WD40 repeat [structural motif]
  3. XM_004856959.2XP_004857016.1  WD repeat and SOCS box-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_004857016.1

    Conserved Domains (4) summary
    COG2319
    Location:7148
    WD40; WD40 repeat [General function prediction only]
    cd03746
    Location:140179
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:1757
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1146
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. XM_004856960.2XP_004857017.1  WD repeat and SOCS box-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_004857017.1

    Conserved Domains (4) summary
    COG2319
    Location:7148
    WD40; WD40 repeat [General function prediction only]
    cd03746
    Location:140179
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:1757
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1146
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  5. XM_013076898.2XP_012932352.1  WD repeat and SOCS box-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_012932352.1

    Conserved Domains (4) summary
    COG2319
    Location:7148
    WD40; WD40 repeat [General function prediction only]
    cd03746
    Location:140179
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:1757
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1146
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_002386948.1 RNA Sequence

  2. XR_002386949.1 RNA Sequence

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