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Lims1 LIM zinc finger domain containing 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101696476, updated on 1-Mar-2025
Gene symbol
Lims1
Gene description
LIM zinc finger domain containing 1
Locus tag
GW7_05153
See related
Ensembl:ENSHGLG00000013204 RGD:18933406
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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See Lims1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624749.1 (11720492..11846571)

NW_004624749.1Genomic Context describing neighboring genes Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene zinc finger and BTB domain-containing protein 44 pseudogene Neighboring gene uncharacterized LOC106009377 Neighboring gene E3 SUMO-protein ligase RanBP2 Neighboring gene vomeronasal type-2 receptor 116-like Neighboring gene coiled-coil domain containing 138

Genomic Sequence:
NW_004624749 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624749.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    11720492..11846571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021258155.1 → XP_021113814.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0AAX6SXR2
    Conserved Domains (5) summary
    cd09331
    Location:22 → 80
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:83 → 134
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:147 → 197
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:203 → 256
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:264 → 317
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_021258154.1 → XP_021113813.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0AAX6SZV8
    Related
    ENSHGLP00000018423.1, ENSHGLT00000018607.1
    Conserved Domains (5) summary
    cd09331
    Location:108 → 166
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:169 → 220
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:233 → 283
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:289 → 342
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:350 → 403
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. XM_004844508.3 → XP_004844565.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAX6P696
    Conserved Domains (5) summary
    cd09331
    Location:108 → 166
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:169 → 220
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:233 → 283
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:289 → 342
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:350 → 403
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. XM_004844509.2 → XP_004844566.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0AAX6P5X9
    Related
    ENSHGLP00000018422.1, ENSHGLT00000018606.1
    Conserved Domains (5) summary
    cd09331
    Location:108 → 166
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:169 → 220
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:233 → 283
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:289 → 342
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:350 → 403
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. XM_004844510.3 → XP_004844567.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

    See identical proteins and their annotated locations for XP_004844567.1

    UniProtKB/TrEMBL
    G5CB91
    Related
    ENSHGLP00000018421.1, ENSHGLT00000018605.1
    Conserved Domains (5) summary
    cd09331
    Location:44 → 102
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:105 → 156
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:169 → 219
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:225 → 278
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:286 → 339
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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