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B3galnt2 beta-1,3-N-acetylgalactosaminyltransferase 2 [ Octodon degus (degu) ]

Gene ID: 101575886, updated on 8-Mar-2024
Gene symbol
B3galnt2
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 2
See related
Ensembl:ENSODEG00000006722
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524703.1 (4988699..5037888, complement)

NW_004524703.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E Neighboring gene G protein subunit gamma 4 Neighboring gene lysosomal trafficking regulator Neighboring gene U4 spliceosomal RNA

Genomic Sequence:
NW_004524703 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524703.1 Reference OctDeg1.0 Primary Assembly

    Range
    4988699..5037888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004640836.2 → XP_004640893.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P3F8I8
    Related
    ENSODEP00000008997.1, ENSODET00000009129.1
    Conserved Domains (1) summary
    cl21608
    Location:307 → 457
    Galactosyl_T; Galactosyltransferase

  2. XM_023700845.1 → XP_023556613.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P6DAD9
    Conserved Domains (2) summary
    PLN03133
    Location:52 → 101
    PLN03133; beta-1,3-galactosyltransferase; Provisional
    cl21608
    Location:307 → 415
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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