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SCN5A sodium voltage-gated channel alpha subunit 5 [ Sorex araneus (European shrew) ]

Gene ID: 101542777, updated on 22-May-2018

Summary

Gene symbol
SCN5A
Gene description
sodium voltage-gated channel alpha subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Insectivora; Soricidae; Soricinae; Sorex
Orthologs

Genomic context

See SCN5A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
101 current SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545932.1 (7363792..7449257)

NW_004545932.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 11 Neighboring gene sodium voltage-gated channel alpha subunit 10 Neighboring gene exo/endonuclease G Neighboring gene activin A receptor type 2B

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004545932.1 Unplaced Scaffold Reference SorAra2.0

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
sodium channel protein type 5 subunit alpha
Names
sodium channel, voltage-gated, type V, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Sorex araneus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SorAra2.0

Genomic

  1. NW_004545932.1 Reference SorAra2.0

    Range
    7363792..7449257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004614564.2XP_004614621.1  sodium channel protein type 5 subunit alpha isoform X6

    Conserved Domains (4) summary
    cd13433
    Location:14731525
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12241481
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561202
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
  2. XM_004614565.1XP_004614622.1  sodium channel protein type 5 subunit alpha isoform X1

    Conserved Domains (4) summary
    cd13433
    Location:14731525
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12241481
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561202
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
  3. XM_004614566.1XP_004614623.1  sodium channel protein type 5 subunit alpha isoform X3

    Conserved Domains (4) summary
    cd13433
    Location:14551507
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:15291766
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561202
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
  4. XM_004614567.1XP_004614624.1  sodium channel protein type 5 subunit alpha isoform X4

    Conserved Domains (4) summary
    cd13433
    Location:14721524
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12231480
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561201
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
  5. XM_004614568.1XP_004614625.1  sodium channel protein type 5 subunit alpha isoform X5

    Conserved Domains (4) summary
    cd13433
    Location:14201472
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11711428
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561149
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
  6. XM_004614569.2XP_004614626.1  sodium channel protein type 5 subunit alpha isoform X2

    Conserved Domains (4) summary
    cd13433
    Location:14721524
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12231480
    Ion_trans; Ion transport protein
    pfam06512
    Location:9561201
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485578
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
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