Format

Send to:

Choose Destination

pdlim1 PDZ and LIM domain 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101474034, updated on 13-Oct-2018

Summary

Gene symbol
pdlim1
Gene description
PDZ and LIM domain 1
See related
Ensembl:ENSMZEG00005011560
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs

Genomic context

See pdlim1 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
7
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG13 NC_036792.1 (24498710..24504553, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531773.1 (294189..300036)

Linkage Group LG13 - NC_036792.1Genomic Context describing neighboring genes Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene pterin-4-alpha-carbinolamine dehydratase Neighboring gene sphingosine-1-phosphate lyase 1 Neighboring gene sorbin and SH3 domain-containing protein 1 Neighboring gene phosphoinositide-3-kinase adaptor protein 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
PDZ and LIM domain protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036792.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    24498710..24504553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004559623.4XP_004559680.2  PDZ and LIM domain protein 1

    Related
    ENSMZEP00005015385.1, ENSMZET00005015883.1
    Conserved Domains (3) summary
    cd09448
    Location:251302
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:980
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:132221
    DUF4749; Domain of unknown function (DUF4749)
Support Center