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MMP24OS MMP24 opposite strand [ Homo sapiens (human) ]

Gene ID: 101410538, updated on 11-Jun-2021

Summary

Official Symbol
MMP24OSprovided by HGNC
Official Full Name
MMP24 opposite strandprovided by HGNC
Primary source
HGNC:HGNC:44421
See related
Ensembl:ENSG00000126005
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MMP24-AS1
Expression
Ubiquitous expression in kidney (RPKM 32.2), fat (RPKM 32.1) and 25 other tissues See more
Orthologs
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Genomic context

See MMP24OS in Genome Data Viewer
Location:
20q11.22
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (35276352..35278122, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (33864155..33865925, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene MMP24-AS1-EDEM2 readthrough Neighboring gene protein C receptor Neighboring gene RNA, 5S ribosomal pseudogene 483 Neighboring gene metallothionein 1 pseudogene 3 Neighboring gene matrix metallopeptidase 24 Neighboring gene FAM83C antisense RNA 1 Neighboring gene eukaryotic translation initiation factor 6 Neighboring gene family with sequence similarity 83 member C

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Web-based, participant-driven studies yield novel genetic associations for common traits.
GeneReviews: Not available

General gene information

Markers

Readthrough MMP24-AS1-EDEM2

Readthrough gene: MMP24-AS1-EDEM2, Included gene: EDEM2

Potential readthrough

Included gene: EIF6

Homology

Clone Names

  • FLJ60292

General protein information

Preferred Names
protein MMP24OS
Names
MMP24 antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355003.2NP_001341932.1  protein MMP24OS

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL121753
    Consensus CDS
    CCDS86948.1
    Related
    ENSP00000489588.1, ENST00000456790.2
  2. NM_001355004.2NP_001341933.1  protein MMP24OS

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL121753
    Consensus CDS
    CCDS86948.1
    Related
    ENSP00000488948.1, ENST00000424358.1

RNA

  1. NR_149147.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121753
  2. NR_149148.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121753

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    35276352..35278122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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