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LINC01587 long intergenic non-protein coding RNA 1587 [ Homo sapiens (human) ]

Gene ID: 10141, updated on 11-Jun-2021

Summary

Official Symbol
LINC01587provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1587provided by HGNC
Primary source
HGNC:HGNC:13716
See related
Ensembl:ENSG00000082929
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
aC1; C4orf6
Summary
This gene is expressed in neuroblastoma; however, the function of this gene is not yet determined. [provided by RefSeq, Jul 2008]
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01587 in Genome Data Viewer
Location:
4p16.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (5524569..5527801)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (5526296..5529528)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 32B Neighboring gene uncharacterized LOC105374362 Neighboring gene RN7SK pseudogene 275 Neighboring gene EvC ciliary complex subunit 2 Neighboring gene EvC ciliary complex subunit 1 Neighboring gene collapsin response mediator protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • expressed in neuroblastoma

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in nervous system development TAS
Traceable Author Statement
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126517.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AA281699, AI590573, BU743146, D82070
  2. NR_126518.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    AI590573, BU743146, D82070
    Related
    ENST00000623565.3
  3. NR_126519.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains alternate 5' exon structure and uses an alternate splice site in an internal exon, compared to variant 1.
    Source sequence(s)
    AI590573, BU743146, DB043858

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    5524569..5527801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_005750.2: Suppressed sequence

    Description
    NM_005750.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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