Format

Send to:

Choose Destination

SCN9A sodium voltage-gated channel alpha subunit 9 [ Orcinus orca (killer whale) ]

Gene ID: 101279787, updated on 20-Mar-2018

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Oorc_1.1 (GCF_000331955.1) Unplaced Scaffold NW_004438435.1 (234230..318284, complement)

NW_004438435.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene DNA primase small subunit-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004438435.1 Unplaced Scaffold Reference Oorc_1.1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Orcinus orca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oorc_1.1 Primary Assembly

Genomic

  1. NW_004438435.1 Reference Oorc_1.1 Primary Assembly

    Range
    234230..318284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004267255.1XP_004267303.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12141454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:483606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_012532133.1XP_012387587.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12141454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:483606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_004267254.2XP_004267302.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12251465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:483606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17811836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Support Center