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Varpa_0532 DNA ligase d [ Variovorax paradoxus EPS ]

Gene ID: 10127345, discontinued on 4-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
Varpa_0532
Gene description
DNA ligase d
Locus tag
Varpa_0532
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Variovorax paradoxus EPS (strain: EPS)
Lineage
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
Names
DNA ligase d
YP_004152864.1
  • KEGG: pol:Bpro_3003 ATP-dependent DNA ligase
    TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein
    PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014931.1 Reference assembly

    Range
    573184..575793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004152864.1 DNA ligase d [Variovorax paradoxus EPS]

    Status: PROVISIONAL

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