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LOC101259643 beta-galactosidase 17 [ Solanum lycopersicum (tomato) ]

Gene ID: 101259643, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101259643
Gene description
beta-galactosidase 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (39654527..39668350, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (39539178..39551782, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene protein HOTHEAD Neighboring gene putative pentatricopeptide repeat-containing protein At1g17630 Neighboring gene LOB domain-containing protein 22 Neighboring gene uncharacterized LOC101259055 Neighboring gene zinc finger family protein Neighboring gene nucleosome assembly protein 1;4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    39654527..39668350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026031552.1 → XP_025887337.1  beta-galactosidase 17 isoform X2

    Conserved Domains (2) summary
    pfam01301
    Location:86 → 427
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:631 → 707
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  2. XM_026031553.1 → XP_025887338.1  beta-galactosidase 17 isoform X4

    Conserved Domains (1) summary
    pfam01301
    Location:86 → 427
    Glyco_hydro_35; Glycosyl hydrolases family 35

  3. XM_004241806.4 → XP_004241854.1  beta-galactosidase 17 isoform X3

    Conserved Domains (2) summary
    pfam01301
    Location:86 → 410
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:614 → 680
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  4. XM_010324545.3 → XP_010322847.1  beta-galactosidase 17 isoform X1

    Conserved Domains (2) summary
    pfam01301
    Location:86 → 427
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:631 → 697
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  5. XM_010324546.3 → XP_010322848.1  beta-galactosidase 17 isoform X5

    Conserved Domains (1) summary
    pfam01301
    Location:86 → 427
    Glyco_hydro_35; Glycosyl hydrolases family 35
Nucleotide Protein
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