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LOC101248386 transcription factor E2FC [ Solanum lycopersicum (tomato) ]

Gene ID: 101248386, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101248386
Gene description
transcription factor E2FC
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (65448035..65454806, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (65361977..65368714, complement)

Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101260226 Neighboring gene putative HVA22-like protein g Neighboring gene tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 Neighboring gene uncharacterized LOC101261325

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E2FC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015441.3 Reference SL3.0 Primary Assembly

    Range
    65448035..65454806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019213719.2 → XP_019069264.1  transcription factor E2FC isoform X1

    UniProtKB/TrEMBL
    A0A3Q7GAI0

  2. XM_004238571.4 → XP_004238619.1  transcription factor E2FC isoform X2

    Conserved Domains (2) summary
    cd14660
    Location:212 → 318
    E2F_DD; Dimerization domain of E2F transcription factors
    pfam02319
    Location:138 → 201
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
Nucleotide Protein
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