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NPTN-IT1 NPTN intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 101241892, updated on 13-May-2022

Summary

Official Symbol
NPTN-IT1provided by HGNC
Official Full Name
NPTN intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:45091
See related
Ensembl:ENSG00000281183 MIM:615176; AllianceGenome:HGNC:45091
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lncRNA-LET
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Genomic context

See NPTN-IT1 in Genome Data Viewer
Location:
15q24.1
Exon count:
1
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (73566938..73569543, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (71384093..71386694, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (73859279..73861884, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs2161 Neighboring gene serine-aspartate repeat-containing protein I-like Neighboring gene REC114 meiotic recombination protein Neighboring gene mitochondrial ribosomal protein S15 pseudogene 1 Neighboring gene neuroplastin Neighboring gene uncharacterized LOC105370891 Neighboring gene Sharpr-MPRA regulatory region 8861 Neighboring gene CD276 molecule

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • NPTN intronic transcript 1 (non-protein coding)
  • long non-coding RNA, low expression in tumor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103844.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022735, AK055007, CN411881
    Related
    ENST00000628401.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    73566938..73569543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    71384093..71386694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)