U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101213455 beta-amylase 3, chloroplastic [ Cucumis sativus (cucumber) ]

Gene ID: 101213455, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC101213455
Gene description
beta-amylase 3, chloroplastic
Locus tag
Csa_009553
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101213455 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (1743164..1745792)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (1607826..1610624)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene poly(U)-specific endoribonuclease-B Neighboring gene eEF1A lysine and N-terminal methyltransferase Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene novel plant SNARE 11

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-amylase 3, chloroplastic
Names
beta-amylase PCT-BMYI

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    1743164..1745792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004147216.3 → XP_004147264.1  beta-amylase 3, chloroplastic

    See identical proteins and their annotated locations for XP_004147264.1

    UniProtKB/TrEMBL
    A0A0A0L215
    Conserved Domains (1) summary
    PLN02803
    Location:1 → 538
    PLN02803; beta-amylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases